species:   Rhsol
pid:       PID0512
parent:    Rhi-milR-116
paralog:   
locus:     KB317849.1:9511-9624
matures:   ['UAUUUGCAGCGCUGGACUCUUGG', 'GUGAUGCUCGUGCUGCGGCGCU']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317849.1:9511-9624

5 out of bounds
9 alignments
9 proper strand
8 stranded perfect matches

                  *************************                                            ************************   
GACUAUAUUCAAUCUUAAAGUAUUUGCAGCGCUGGACUCUUGGCUUUUGUUGUGUCUUGAGCUGGACUUUACUGGCAAUCGAGAGAGCCGUGAUGCUCGUGCUGCGGCGCUCCU
..................(((..(((((((((.((..((.((((((........(((((((((((......)))))..)))))))))))).))..)).))))))))).)))...
--------------------UAUUUGCAGCGCUGGACUCUUGG----------------------------------------------------------------------- l=23 a=1 c
-----------------------------------------------------------------------------------------GUGAUGCUCGUGCUGCGGCGCU--- l=22 a=0 c*
----------------------------------------------------UGUCUUGAGCUGGACUUUACUGGC-------------------------------------- l=24 a=3 ma
-----------------------------------------------------------------------------------------GUGAUGCUCGUGCUGCGGCGCU--- l=22 a=0 ma*

---------------UAAAGUAUUUGCAGCGCUGGACa---------------------------------------------------------------------------- l=23 a=1 
-------------------GUAUUUGCAGCGCUGGACUCUUGG----------------------------------------------------------------------- l=24 a=1 
--------------------UAUUUGCAGCGCUGGACUCUUGG----------------------------------------------------------------------- l=23 a=1 (c)
--------------------UAUUUGCAGCGCUGGACUCUUGGC---------------------------------------------------------------------- l=24 a=1 
----------------------------------------------------UGUCUUGAGCUGGACUUUACUGG--------------------------------------- l=23 a=1 
----------------------------------------------------UGUCUUGAGCUGGACUUUACUGGC-------------------------------------- l=24 a=3 (ma)
----------------------------------------------------------------------------------------CGUGAUGCUCGUGCUGCGGC------ l=20 a=1 

mb-00110
ax-1001011
ku-01
ss-111111101100
fn-011
